Resources and Courses
Scripts & Protocols
FASTQ to VCF
ipts for varint calling and filtering of diploid-autopolyploid SNP dataset using GATK wrapped in a Snakemake pipeline by Jörn Gerchen
ScanTools_ProtEvol
Population genomic inference from diploid-autopolyploid systems by Sonia Celestini and Majda Bohutínská
Genome assembly
Scripts and processes for de novo genome assembly from PacBio HiFi and Hi-C data by Mahnaz Nezamivandchegini
Pollen viability
Protocol for automatized detecting of pollen viability developed by Majda Bohutínská
Teaching materials
Materials for hands-on course on analysis of molecular data in EcoEvo (taught yearly at Charles Uni)
Workshops on population genetics of polyploids (Run every second year by an international team of lecturers)
Webpage of Interdisciplinary excursion, Mezioborová exkurze (in Czech)